PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G051600.1
Common NameB456_004G051600, LOC105790434
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 297aa    MW: 33451.1 Da    PI: 5.7861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G051600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-1976124355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Gorai.004G051600.1  76 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 124
                         9*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-2275133IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-3275133IPR001471AP2/ERF domain
SMARTSM003801.1E-3775138IPR001471AP2/ERF domain
PROSITE profilePS5103223.77575132IPR001471AP2/ERF domain
PRINTSPR003677.5E-127687IPR001471AP2/ERF domain
PfamPF008475.9E-1276124IPR001471AP2/ERF domain
CDDcd000181.59E-3376133No hitNo description
PRINTSPR003677.5E-1298114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MCGGAIISEF IIRKGGHGVT ASDIWPNSPF VKNGFSSDST QSFHDDSLAL CKRHRPQSSD  60
GVQVEKKVKR QRKNLYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDREAR  120
KIRGKKAKVN FPNEDDAFST QYNPQINNST TAWNFTHPSN PPIYQQPQVN NGFRYGWNDL  180
GGFATDPIVV SEEDSSGSGD QKTNVCYLPV KPEEQQEGEA VNKSAIFEVQ EEENQVQKLS  240
EELIAYENYM KFYQIPYLDG QSPMTQNAVA QQESVFGELW NFLDDGVAVP PTSMPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2276132360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16671KVKRQR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473480.10.0PREDICTED: ethylene-responsive transcription factor ERF071
TrEMBLA0A0D2R6890.0A0A0D2R689_G
STRINGGLYMA10G02080.11e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-28ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]